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Duodenum and Paneth Cells

Duodenum

For medical students3 min readUpdated 2026-10-10

The duodenum is the initial segment of the small intestine, characterized by the presence of villi, crypts, and specific glands in the submucosa. Paneth cells—exocrinocytes at the base of the crypts—play a vital role in its function by providing antimicrobial defense and enzymatic digestion.

Paneth cellsLocated exclusively at the base of the crypts; contain acidophilic granules.
Duodenal markerPresence of duodenal (Brunner's) glands in the submucosa.
Turnover rateThe life cycle of an intestinal epithelial cell is approximately 5–6 days.
Epithelial stem cellsStem cells are localized in the lower half of the intestinal crypts.

Morphological Transition from Stomach to Intestine

Histological slides of the junction between the pyloric part of the stomach and the duodenum clearly demonstrate the change in relief and wall layers. In the stomach, the mucosa forms deep gastric pits, while the muscularis mucosae and muscularis externa consist of three layers. There are no glands in the gastric submucosa (pyloric mucous glands lie in the lamina propria).

Upon transitioning to the duodenum, the picture changes dramatically:

Paneth Cells (Exocrinocytes with Acidophilic Granules)

Paneth cells are specialized exocrine cells located exclusively at the base of the crypts and never found on the villi. When stained with hematoxylin and eosin, dense acidophilic granules that stain bright pink or red are clearly visible in their apical region.

These cells perform two crucial functions:

  1. Antimicrobial (protective) function: They secrete the enzyme lysozyme, which can destroy the cell walls of pathogenic bacteria and protozoa.
  2. Digestive function: They release dipeptidases—enzymes that break down dipeptides into free amino acids.

Endocrine Apparatus of the Small Intestine

Endocrine cells (APUD cells) are scattered within the epithelium of both crypts (where their density is highest) and villi. Unlike exocrinocytes, their hormone-containing secretory granules accumulate in the basal part of the cell. Hormones are released either into blood capillaries or via paracrine signaling (affecting neighboring cells). There are 6 types of such cells in the intestine, 4 of which are also present in the stomach.

Main types of endocrinocytes:

Epithelial Regeneration

Constant physiological renewal of the epithelial layer is critical for gastrointestinal function. In the small intestine, undifferentiated epithelial cells located in the lower half of the crypts act as stem cells (the cambial zone). For comparison, in the stomach, stem cells are located in the neck of the glands, closer to the surface.

Differential Diagnosis of Small Intestine Segments

The duodenum has several morphological differences from the jejunum and ileum:

Mnemonic

The functions of S cells can be remembered by their name: they secrete Secretin, which Suppresses gastric secretion and Stimulates digestive juice output for intestinal digestion.

Frequently asked questions

What types of endocrine cells (APUD cells) are present in the small intestinal epithelium?

There are 6 types of endocrinocytes in the small intestinal epithelium, of which three are most prominent:

  • EC cells — contact the intestinal lumen, releasing serotonin and motilin to stimulate motility and increase intestinal juice production.
  • S cells — respond to chyme entry by producing secretin, which inhibits gastric secretion and activates pancreatic juice and bile release.
  • I cells — secrete cholecystokinin (pancreozymin), which stimulates pancreatic and biliary secretion synergistically with S cells.
What secretion is produced by the duodenal (Brunner's) glands?

Duodenal (Brunner's) glands produce a thick, colorless, mildly alkaline mucous fluid. The secretion includes:

  • Mucus — neutralizes gastric juice, protects the mucosa, and provides an optimal pH for enzymes.
  • Biologically active substances — lysozyme and urogastrone (inhibits hydrochloric acid secretion and stimulates cell division).
  • Enzymes — enteropeptidase (converts trypsinogen to trypsin), dipeptidase, amylase, and minor proteolytic and lipolytic activities.
What is the main difference between the duodenal wall and the stomach and other parts of the intestine?

The primary diagnostic feature of the duodenum is the presence of duodenal (Brunner's) glands in the submucosa. Neither the stomach nor other parts of the small intestine have glands in the submucosa.

Where are Paneth cells located and how can they be identified on a slide?

They are located strictly at the base of the intestinal crypts. On an H&E-stained slide, they are easily recognized by the presence of bright pink-red (acidophilic) granules in their apical region.

What is unique about the migration of Paneth cells during regeneration?

Unlike most epithelial cells, which originate in the crypts and migrate upward onto the villi before being shed, Paneth cells differentiate and remain permanently at the base of the crypts.

Where do granules accumulate in intestinal endocrine cells?

In APUD cells (endocrinocytes), secretory hormone granules accumulate in the basal part of the cell, because their secretion is released into blood capillaries or tissue fluid rather than the intestinal lumen.

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