Sechenov School
Home › Biochemistry › DNA Cloning

DNA Cloning

For medical students2 min readUpdated 2026-10-10

DNA cloning is a molecular biology technique used to produce large quantities of target DNA, RNA, or specific proteins. The core principle involves inserting a gene of interest into a bacterial cell, which then acts as a biological factory, replicating the gene during cell division or synthesizing the encoded product.

VectorsPlasmids and bacteriophages used to deliver foreign genes
Restriction enzymesEnzymes that cleave DNA molecules and generate sticky ends
SelectionIdentification of transformed cells using antibiotics
ProductsInsulin, somatostatin, factor VIII, hepatitis C vaccines

Vectors and Gene Preparation

To transfer foreign genetic material into a bacterium, specialized carrier molecules called vectors are required. Most commonly, these are bacteriophages or plasmids (extrachromosomal circular bacterial DNA molecules).

The process begins with the preparation of the vector and the donor DNA fragment containing the target gene. Both molecules are treated with the same restriction enzyme (restriction endonuclease). This step cuts the circular plasmid at a specific restriction site and yields a linear donor DNA fragment with identical complementary ("sticky") ends ready for joining.

Main Stages of Cloning

The creation and introduction of a recombinant molecule involve several sequential steps:

  1. Ligation. The previously prepared linearized plasmid and the foreign DNA fragment are joined together. This forms a chimeric plasmid (recombinant DNA) combining the vector's genetic material and the insert.
  2. Transformation. The chimeric molecule is introduced into a host cell (usually a bacterium). The bacterial cell now contains both its native chromosome (nucleoid) and the newly introduced plasmid.
  3. Selection (Screening). It is necessary to identify and isolate only those bacteria that have successfully taken up the recombinant DNA. Antibiotic resistance genes originally present in the plasmid are used for this purpose.
  4. Cultivation. The surviving, selected bacteria actively multiply on a nutrient medium. Cell division drives plasmid replication, effectively cloning the inserted DNA fragment.

Two Directions of Cell Utilization

After successful bacterial culture growth, subsequent steps diverge based on the experimental goal:

Practical Applications of the Technology

Recombinant DNA technology revolutionized medicine, biology, and pharmacology. Key applications include:

Mnemonic

To remember the basic cloning sequence: RLTSC (Restriction — Ligation — Transformation — Selection — Cultivation). "Restriction Links Targets Securing Copies."

Frequently asked questions

Which enzyme joins the plasmid and the foreign DNA fragment during the ligation stage?

The plasmid and the foreign DNA fragment are joined by DNA ligase. This enzyme covalently links fragments by restoring phosphodiester bonds between adjacent nucleotides.

This process restores the integrity of the sugar-phosphate backbone, forming a recombinant (hybrid) DNA molecule. Common ligation methods include:

  • Sticky-end ligation — mediated by hydrogen bonding between single-stranded complementary nucleotide overhangs.
  • Ligation using artificially added sticky ends.
  • Blunt-end ligation.
What types of restriction enzymes are used in genetic engineering?

Genetic engineering utilizes approximately 200 restriction enzymes (restriction endonucleases), classified by their cleavage pattern.

Cleavage TypeMechanismResult
Axis of symmetryCleavage across the axis of symmetry of the recognition sequenceDouble-stranded blunt ends
StaggeredCleavage with a stagger, producing an overhangSticky ends with mutually complementary regions

Sticky ends can form on the 5'-end (phosphate) or 3'-end (hydroxyl).

Why treat both the plasmid and donor DNA with the same restriction enzyme?

This is necessary to generate identical sticky ends. Only then can the donor DNA fragment properly integrate into the cut plasmid via complementary base pairing.

How are bacteria with the chimeric plasmid separated from cells without it?

Through antibiotic selection. The plasmid carries an antibiotic resistance gene. When grown on a medium containing that antibiotic, only bacteria that have successfully taken up the vector survive.

What is the difference between amplification and expression of a cloned gene?

Amplification aims to produce many copies of the DNA molecule itself. Expression means the bacterium "reads" the inserted gene and synthesizes the target protein based on it.

Go deeper

More topics in Biochemistry

InsulinHydrolasesPolymerase Chain ReactionBlood Glucose Regulation: Fasting, Postprandial, and Starvation StatesThyroid HormonesLyasesGlucose Level DisordersBiosynthesis of Higher Fatty AcidsRegulation of Cortisol Synthesis and SecretionFunctions of Nucleotides and Their DerivativesProtein Function FundamentalsDNA DiagnosticsBiochemistry →