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Electron Microscopy

For medical students2 min readUpdated 2026-10-10

Electron microscopy is a morphological research method that provides magnifications from 100 to 500,000x or more by using a beam of electrons instead of visible light. Due to the shorter wavelength of electrons, this method allows the study of the ultramicroscopic structure of cells and tissues inaccessible to conventional light microscopes.

MagnificationExceeds light microscopy capabilities by 500 times (up to 500,000x and more).
RadiationA beam of electrons that bypasses the smallest structures due to its short wavelength.
Section ThicknessUltrathin sections for TEM are only 30–50 nm thick.
ContrastingHeavy metal salts (osmium, lead, uranium) are used instead of traditional dyes.

Operating Principles and Optics

The main difference between an electron microscope and a light microscope is the use of a beam of electrons as the radiation source. The wavelength of electrons is significantly shorter than that of visible light. This short wavelength easily bypasses minute obstacles, providing the highest possible resolving power.

Instead of glass lenses, electromagnetic coils are used to focus the electron beam. A high vacuum must be maintained inside the microscope column to prevent electrons from losing energy through collisions with gas molecules.

Classification of Electron Microscopes

Depending on how the electron beam interacts with the specimen, there are two main types of instruments:

Optical Path of the Transmission Electron Microscope (TEM)

In a TEM, electrons are emitted by the cathode and accelerated via a potential difference toward the anode. After passing through an aperture in the anode, the beam enters a vacuum system of electromagnetic lenses:

  1. Condenser lens directs and focuses the beam onto the specimen.
  2. Objective lens gathers the rays that have passed through the tissue, producing the primary magnification.
  3. Projector lens (acting analogously to an eyepiece) forms the final image.

The image is visualized on a fluorescent screen, which emits light wherever electrons strike it.

Specimen Preparation for TEM

The specimen preparation process has strict requirements. Very small tissue pieces (about 1 mm³) are collected. Fixation is carried out in two stages:

After dehydration, the material is embedded not in paraffin, but in epoxy resins. The blocks are polymerized in an incubator.

Sectioning is performed using ultramicrotomes. The resulting sections, 30–50 nm thick, are placed on special metal grids.

Contrasting (Staining)

In electron microscopy, the term "staining" is avoided; instead, the process is called contrasting. Heavy metal salts (tungsten, lead, uranium) are used for this purpose.

Heavy metals deposit on cellular structures (primarily membrane phospholipids) and scatter or absorb electrons. Areas of the specimen where salts accumulate block the electron beam and appear dark on the fluorescent screen.

Frequently asked questions

What reagents are used for tissue dehydration prior to embedding in epoxy resins?

Graded series of alcohols are used for tissue dehydration prior to embedding.

  • Alcohol (Ethanol) — used for gradual dehydration of the material via solutions ranging from 70° to 100° concentration.

The process consists of sequentially passing the specimen through an alcohol gradient. Once water is completely removed from the tissue, the workflow proceeds to infiltration and embedding in embedding media, which are synthetic resins.

Why is a vacuum required in an electron microscope?

A high vacuum is necessary so that the electron beam is not scattered and does not lose energy through collisions with air molecules inside the column.

What is the difference between a transmission and a scanning electron microscope?

A transmission electron microscope (TEM) passes electrons through an ultrathin section, yielding a 2D image of internal cell structures. A scanning microscope (SEM) "probes" a metal-coated surface, creating a 3D topographic image.

What is used instead of glass microscope slides in electron microscopy?

Special metal grids are used instead of glass slides to support the ultrathin sections.

Why is osmium used during specimen preparation?

Osmium tetroxide is used for secondary fixation: it stabilizes membrane phospholipids while simultaneously contrasting structures by imparting electron density.

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