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Gastrulation (Second Phase)

gastrulatio

For medical students2 min readUpdated 2026-10-10

The second phase of gastrulation represents the transition from a flat bilaminar disc to the basic body plan of the embryo. During this stage, three primary germ layers and the axial organ rudiments are established, paving the way for subsequent histogenesis and organogenesis.

TimelineEnd of week 3 through week 4 of development (days 18–28).
OutcomeFormation of the trilaminar germ disc (ectoderm, mesoderm, endoderm).
Exception ZoneThe prechordal plate lacks mesoderm, featuring direct contact between ectoderm and endoderm.
Notochord RemnantsPersist in the adult body as the *nucleus pulposus* of intervertebral discs.

Surface Migration of the Epiblast

The initial stage of the second phase of gastrulation involves the movement of cell masses prior to their internalization into the embryo.

Internal Migration and Germ Layer Formation

After cells ingress through the primitive streak and node, their fate and direction of movement change drastically. Once inside, the cellular streams advance cranially and spread laterally.

Differentiation occurs in several waves:

  1. First Migration Wave (Endoderm Formation): The earliest internalizing cells actively displace the hypoblast, pushing it to the periphery. Taking its place, these new cells form the embryonic endoderm.
  2. Second Migration Wave (Mesoderm Formation): The next stream of cells wedges between the epiblast and the newly formed endoderm. Their fate depends on their final position:
  3. Cells migrating strictly forward along the midline form the notochord.
  4. Cells flanking the notochord form the intraembryonic mesoderm.
  5. Cells migrating far beyond the embryonic disc become extraembryonic mesoderm (contributing to extraembryonic membranes).
  6. Ectoderm Formation: Epiblast cells that do not participate in internal migration and remain on the surface differentiate into the embryonic ectoderm.

A key topographic exception is the prechordal plate. In this region, migrating mesoderm is entirely absent, and the two layers—ectoderm and endoderm—lie in direct contact, forming a local bilaminar area.

Development of the Axial Complex and Notochord

From the end of week 3 through week 4 of development (days 18–28), the trilaminar embryonic disc undergoes extensive remodeling as germ layers differentiate into specific tissue and organ rudiments (the axial complex).

A key process of this period is the formation of the notochord:

This results in a prominent midline structure. The notochord acts as the primary skeletal axis of the embryo and provides the structural template for the future vertebral column. During subsequent development, the notochord regresses; in the adult human body, only small remnants persist as the nucleus pulposus located in the center of intervertebral discs.

Frequently asked questions

What tissues and organs are derived from the embryonic ectoderm?

Embryonic ectoderm gives rise to three major derivatives:

  • Neural tube — gives rise to the brain and spinal cord.
  • Neural crest cells — give rise to peripheral sensory and autonomic ganglia, melanocytes, and neuroendocrine cells.
  • Surface ectoderm — forms the epidermis and its appendages (hair, nails, sebaceous glands, sweat glands), as well as the epithelium of the oral cavity, the distal anal canal, and the vagina.
What other structures besides the notochord make up the embryonic axial complex?

The axial complex of the embryo includes:

  • Neural tube.
  • Primitive gut.
  • Somites — mesodermal derivatives that differentiate into dermatomes, myotomes, and sclerotomes.
  • Intermediate mesoderm (nephrotomes) — gives rise to the urogenital system.
  • Lateral plate mesoderm — splits into parietal (somatic) and visceral (splanchnic) layers enclosing the coelomic cavity.

Mesenchyme fills the spaces between these rudiments.

Which cells give rise to the embryonic ectoderm?

It forms from epiblast cells that do not undergo invagination or internal migration, remaining on the surface of the embryonic disc.

What occurs during the first wave of internal migration?

The cells that internalize first displace the existing hypoblast peripherally and replace it to form the embryonic endoderm.

Where is mesoderm absent in the trilaminar embryo?

The mesodermal layer is entirely absent in the region of the prechordal plate (at the cranial end), where ectoderm and endoderm are in direct apposition.

What does the notochord become in the adult?

The notochord itself degenerates during development, persisting only as the gelatinous nucleus pulposus within the intervertebral discs.

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