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Quarantine Infections and Sepsis: Pathomorphology

Pestis, Variola vera, Sepsis

For medical students3 min readUpdated 2026-10-10

This material covers the pathomorphology of highly dangerous (quarantine) infections—including pulmonary and primary septic plague, smallpox, and yellow fever—as well as the unique pathobiological entity of sepsis. These conditions share a severe systemic intoxication, widespread organ involvement, and strict epidemiological safety requirements.

PlagueMortality of primary septic and severe forms approaches 100%.
Smallpox MarkerGuarnieri and Paschen bodies are specific diagnostic signs of Variola virus infection.
Yellow FeverEndemic to tropical regions of Africa and South America, transmitted by mosquitoes.
Autopsy SafetyFor quarantine infections, organs are examined in situ without extraction from the body.
SepsisAn acyclic condition characterized by a systemic inflammatory response where post-infectious immunity does not develop.

Quarantine Infections: Plague and Yellow Fever

The primary septic form of plague (pestis) proceeds fulminantly, with death occurring within 24 to 36 hours. Because of this rapid course, specific morphological changes do not have time to develop, making bacteriological diagnosis essential. In severe pulmonary or septicemic forms, organs on cross-section appear mottled, gray-red with necrosis, and the pleura exhibits fibrinous exudate. Parenchymatous organs show fatty change.

Yellow fever is a vector-borne zoonotic infection transmitted by mosquitoes. The target organs are the liver, kidneys, and blood vessels:

The disease features a characteristic remission around days 4–5, after which severe cases develop cardiovascular and renal failure (up to anuria and uremic coma).

Smallpox (Variola vera)

Although officially eradicated, the cessation of mass vaccination leaves populations vulnerable. The causative agent is a large DNA poxvirus that induces specific Guarnieri bodies (cytoplasmic viral inclusions) and Paschen bodies in the epithelium.

Transmission occurs via airborne droplets or direct contact. During the incubation period (10–12 days), the patient is not contagious, and the virus undergoes minor and major viremia phases. The primary clinical sign is a skin rash evolving through distinct stages:

  1. Papule: Edema, swelling, and thickening of the epidermis.
  2. Vesicle and pustule: Ballooning and reticular degeneration (forming a multilocular blister up to 3 mm).
  3. Peak stage (Days 9–10): Purulent exudate in the papillary dermis with central pustular necrosis.

In extremely severe forms ("black smallpox"), massive diapedetic hemorrhages develop in the dermis. The exudate becomes hemorrhagic, and hemoglobin breakdown into iron sulfide turns the lesions black-gray. Mortality in severe forms (pustular-hemorrhagic, fulminant, confluent) reaches 100%.

Pathology of Sepsis as a Systemic Reaction

Sepsis differs fundamentally from classical infectious diseases. The primary driver of its pathogenesis is not a specific pathogen (which can be any opportunistic flora, most commonly Gram-negative), but rather an altered host reactivity (hyperergy).

Key differences of sepsis:

Modern diagnosis relies on identifying SIRS criteria (Systemic Inflammatory Response Syndrome). Criteria include temperature alterations (> 38 °C or < 36 °C), tachycardia (> 90 bpm), tachypnea (> 20 breaths/min or pCO2 < 32 mmHg), and leukocyte abnormalities (> 12,000/µL, < 4,000/µL, or > 10% immature band forms). Death typically results from multiple organ dysfunction syndrome (MODS).

Autopsy Protocols for Quarantine Infections

The primary objectives for the pathologist are to prevent the spread of infection and avoid personal contamination.

Key safety requirements:

Mnemonic

To remember the SIRS criteria for sepsis, recall the 'Four T’s': Temperature, Tachycardia, Tachypnea (or drop in CO2), and 'Total white cells' (leukocytosis/leukopenia/bandemia).

Frequently asked questions

What clinical forms of plague are recognized besides the primary septic form?

In addition to the primary septic form, forms include:

  • Cutaneous (skin-bubonic, cellulocutaneous);
  • Bubonic;
  • Primary pneumonic;
  • Secondary pneumonic;
  • Intestinal;
  • Plague meningitis;
  • Other forms: abortive, asymptomatic, and minor.
Why do morphological changes fail to develop in hyperacute plague?

Due to the extremely rapid course (death in 24–36 hours), specific organ changes do not have time to form; signs of acute septicemia predominate.

What is the significance of hyperergy in sepsis?

Hyperergy means the body mounts an abnormal, excessive allergic and inflammatory response to opportunistic flora, driving a universal clinical picture regardless of the causative agent.

How is a corpse handled after an autopsy involving a quarantine infection?

The corpse and organs are covered with quicklime, doused in disinfectant solutions (e.g., lysol), wrapped in soaked sheets, and buried deeply with alternating layers of earth and lime.

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