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Drug Biotransformation and Metabolism

Biotransformatio

For medical students3 min readUpdated 2026-10-10

Biotransformation (drug metabolism) is the process by which the body's enzymes alter the chemical structure and physicochemical properties of medicinal substances. The primary goal of this process is to convert non-polar, lipophilic molecules into polar, hydrophilic compounds, preventing their passive reabsorption in the renal tubules and accelerating their elimination.

Primary OrganLiver (microsomal enzymes of hepatocytes)
Process GoalConvert non-polar lipophilic molecules into polar hydrophilic ones
Toxicity RiskEnzyme inhibition slows metabolism and leads to drug accumulation
ProdrugsInitially inactive, acquire therapeutic activity only after biotransformation

Why Does the Body Metabolize Drugs?

Any administered drug is treated by the body as a foreign compound (xenobiotic) that must be eliminated. Most drugs are initially lipophilic, a property that allows them to easily cross cell membranes and absorb efficiently into the bloodstream.

However, lipophilicity becomes a major obstacle during excretion: once in the kidneys, such substances easily traverse renal tubular membranes and undergo passive reabsorption back into the blood. The task of biotransformation is to modify the molecular structure by increasing its polarity (polaritas) and hydrophilicity. Water-soluble (polar) metabolites cannot be reabsorbed in the tubules and are reliably excreted from the body in urine or bile.

Phases of Biotransformation

The metabolism of most drugs occurs in two sequential stages, each fulfilling a specific chemical objective.

Phase I: Non-Synthetic Reactions (Metabolic Transformation) This is the initial stage resulting in the formation of reactive metabolites. The main types of chemical alterations include:

Phase II: Biosynthetic Reactions (Conjugation) Following Phase I, this process involves attaching endogenous chemical groups to the drug or its metabolite. This is carried out by transferase enzymes. The most common reaction is glucuronidation (attachment of glucuronic acid residues). Molecules may also be conjugated with glutathione, glycine, sulfuric acid, or methyl groups. Conjugation products are highly polar, pharmacologically inactive, and rapidly excreted by the kidneys or biliary system.

Cytochrome P450 System

Microsomal enzymes located on the membranes of the smooth endoplasmic reticulum of hepatocytes play a key role in Phase I metabolism.

Central to this system is Cytochrome P450 (Cytochromum P-450), a mixed-function oxidase. It is a hemoprotein that binds the drug molecule and oxygen. With the participation of NADPH (an electron donor), the oxygen molecule is split: one atom is incorporated into the drug to form an oxidized metabolite, while the other forms a water molecule ($H_2O$).

These oxidases exhibit low substrate specificity. The most important isoenzyme is CYP3A4, which metabolizes a vast number of diverse drugs. The activity of Cytochrome P450 isoenzymes can be altered by other substances:

Extrahepatic Metabolism and Presystemic Elimination

Although the liver (hepar) performs the bulk of the metabolic workload, enzyme systems are also localized in other tissues: the intestinal wall, kidneys (renes), lungs (pulmones), skin, and blood plasma. Some reactions occur outside the endoplasmic reticulum—in the cytosol or mitochondria (non-microsomal enzymes with high substrate specificity).

The enzymatic activity of the intestine (intestinum) is of immense clinical significance. Approximately 70% of all Cytochrome P450 isoenzymes (predominantly CYP3A4) reside in the intestinal wall. Working alongside the transport protein P-glycoprotein, they mediate presystemic elimination (first-pass metabolism), breaking down a significant portion of an orally administered drug before it reaches systemic circulation. This substantially reduces the bioavailability of many drugs.

Bioactivation and Toxification

The outcome of biotransformation is not always the safe destruction of a drug. Alternative scenarios include:

  1. Retention of Activity: Metabolites may retain activity comparable to the parent drug (e.g., diazepam or codeine), prolonging the therapeutic effect. Even Phase II products can remain active; for instance, morphine-6-glucuronide possesses potent analgesic activity.
  2. Prodrug Activation: The substance is administered in an inactive form and becomes active only after a portion of the molecule is cleaved during metabolism.
  3. Toxification: Intermediate products can occasionally act as cellular poisons. For example, paracetamol (Paracetamolum) is oxidized by the CYP2E1 isoenzyme into a highly toxic metabolite. Normally, this metabolite is instantly detoxified via conjugation with glutathione. However, when glutathione stores are depleted (overdose) or the enzyme is overactive (chronic alcoholism), this toxin destroys liver and kidney cells.

Frequently asked questions

What main Cytochrome P450 isoenzymes, aside from CYP3A4 and CYP2E1, participate in drug metabolism?

In addition to CYP3A4 and CYP2E1, literature highlights the following Cytochrome P450 isoenzymes:

  • CYP1A2 — metabolizes xanthines, paracetamol, warfarin, clomipramine, and tamoxifen.
  • CYP2D6 — metabolizes codeine, psychotropic and cardiovascular drugs, and omeprazole.
  • CYP2C19 — participates in the bioactivation of clopidogrel.
  • CYP2C9 and CYP2B6 — also participate in secondary pathways of clopidogrel bioactivation.
  • CYP3A5 — mentioned alongside CYP3A4 as part of the broad group metabolizing the majority of pharmaceuticals.
  • CYP1A1, CYP2A1, and CYP1B1 — noted among cutaneous Cytochrome P450 isoenzymes present in the skin.
Which specific enzymes are classified as non-microsomal biotransformation enzymes?

Non-microsomal biotransformation enzymes include those located in the cytosol, mitochondria, lysosomes, cytoplasmic membranes, and blood plasma:

  • Monoamine oxidase type A (MAO-A) — catalyzes oxidative deamination of catecholamines and biogenic amines.
  • Alcohol dehydrogenase — catalyzes the oxidation of ethanol (Spiritus aethylicus).
  • Xanthine oxidase — responsible for the hydroxylation of purine compounds.
  • Reductases — participate in reduction reactions (including those produced by intestinal microflora).
  • Esterases, amidases, and phosphatases — catalyze the hydrolysis of esters, amides, and phosphate bonds.
What are some clinical examples of prodrugs?

Clinical practice utilizes several prodrugs that become active only through metabolic conversion:

  • Clopidogrel — requires activation by Cytochrome P450 isoenzymes to exert its antiplatelet effect.
  • Ciclesonide — an esterified steroid converted in the lungs to active desciclesonide.
  • Tibolone — metabolized into compounds with estrogenic, progestogenic, and androgenic activities.
  • Enalapril (Enalaprilum) — hydrolyzed to active enalaprilat to improve absorption.
  • Valacyclovir — a substrate for oligopeptide transporters, converted to its active form in the liver.
  • Levodopa (Levodopa) — crosses the blood-brain barrier and is decarboxylated into dopamine (Dopaminum).
  • Gabapentin (Gabapentin) — modified to enhance lipophilicity and penetration into the central nervous system.
What functions does the P-glycoprotein transporter perform, aside from intestinal presystemic elimination?

Beyond participating in presystemic elimination, the P-glycoprotein transporter acts as an efflux pump across various tissues:

  • Central Nervous System Protection — restricts the penetration of lipophilic substances across the blood-brain barrier by pumping them out of brain tissue back into the blood.
  • Tumor Resistance — confers cellular resistance to anticancer agents (e.g., vinca alkaloids) by actively expelling the drug from tumor cells.
  • Tissue Distribution Limitation — restricts tissue concentrations of drugs by acting as an ATP-dependent transporter that prevents their intracellular accumulation.
Why must lipophilic substances become hydrophilic?

If a lipophilic substance enters the kidneys, it easily crosses the cell membranes of the renal tubules and is reabsorbed back into the blood. Hydrophilic substances cannot cross these membranes and are therefore reliably excreted in the urine.

What is the core purpose of conjugation reactions?

This is Phase II of biotransformation, where an endogenous molecule (such as a glucuronic acid residue) is attached to the drug. This creates a large, polar, inactive complex that is rapidly eliminated from the body.

Why is consuming alcohol while taking paracetamol dangerous?

Chronic ethanol intake induces (accelerates the activity of) the hepatic CYP2E1 isoenzyme. This causes paracetamol to be converted too rapidly into its toxic metabolite, overwhelming endogenous glutathione stores and leading to severe hepatotoxicity.

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