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Microbiological Diagnosis of HIV Infection

Human immunodeficiency virus

For medical students2 min readUpdated 2026-10-10

The contemporary algorithm for the microbiological confirmation of HIV infection relies exclusively on serological testing methods. The detection of specific antibodies and antigens forms the basis for diagnosis, whereas molecular genetic technologies (PCR) have a strictly auxiliary role and are applied at later stages of patient management.

ScreeningInitial diagnostics are performed using ELISA to detect antibodies and the p24 antigen.
ConfirmationThe reference method is Western blotting targeting antibodies against envelope proteins (env).
Role of PCRUsed for viral load quantification, subtype identification, and resistance testing, but not for primary diagnosis.
ImmunosuppressionA CD4+ T-cell count dropping below 500 cells/µL serves as a marker of immune suppression.

Initial Diagnostics (Screening)

The first stage of laboratory evaluation is screening. Its primary objective is to identify potentially infected serum samples for subsequent in-depth analysis.

ELISA (Enzyme-Linked Immunosorbent Assay) is the primary method used at this stage. The goal of this test is twofold: test systems are designed to simultaneously detect specific human antibodies against the virus as well as the viral p24 antigen. Although this combined approach increases the reliability of the initial diagnostic tier, a positive ELISA result is not a definitive diagnosis and requires mandatory verification.

Confirmatory Diagnostics (Reference Method)

Samples that test positive during screening are sent for confirmatory testing. Western blotting serves as the reference method that finalizes the microbiological diagnosis. This method allows for the detailed separation of viral proteins and the detection of antibodies directed against specific structural components of the pathogen.

A strict criterion for establishing a positive diagnosis is the detection in the patient's serum of antibodies against at least two viral envelope glycoproteins. These surface proteins are encoded by genes of the env group. A crucial rule of the algorithm is that the diagnosis is confirmed based on envelope proteins regardless of whether antibodies against core virion proteins (gag group) or viral enzymes (pol group) are present in the patient's serum.

The Role of PCR in the Testing Algorithm

Molecular genetic methods, such as polymerase chain reaction (PCR), play an important but strictly auxiliary role in the microbiological algorithm. PCR is definitively not used for primary diagnostics. The main reason for this lies in the extreme genetic variability of the virus—due to constant mutations, primers may fail to recognize the altered genome, leading to false-negative screening results.

PCR is only utilized after the diagnosis has been definitively confirmed via serological methods. The method is necessary to address three clinical tasks:

Immunological Monitoring

Because the virus systematically destroys the patient's immune system, microbiological diagnosis is inextricably linked with immunological monitoring. Clinicians must continuously assess the degree of preservation of the body's defenses.

The basis of monitoring is the regular enumeration of key T-lymphocyte subpopulations—cells bearing CD4 and CD8 receptors. A decline in the CD4+ T-cell count is considered the primary marker of progressive immunosuppression. If this parameter drops below the critical threshold of 500 cells/µL, it indicates pronounced immune depression and necessitates immediate adjustment of the patient management strategy.

Mnemonic

To remember the protein groups in Western blotting: Env (Envelope) — critical for diagnosis; Gag (Core); Pol (Polymerase — enzymes).

Frequently asked questions

Specifically which envelope glycoproteins (env) are detected in HIV Western blotting?

HIV Western blotting detects antibodies against specific envelope glycoproteins—products of the env gene: the surface glycoprotein gp120 and the transmembrane glycoprotein gp41. Reliable confirmation of infection requires the detection of antibodies against at least two envelope glycoproteins; antibodies to internal proteins (gag and pol) may or may not be present.

Which viral proteins are encoded by the gag and pol genes in HIV?

The gag gene encodes structural proteins of the inner virion: p24, the capsid protein forming the capsid; p17, the matrix protein; p9 and p6, involved in the release of new viral particles; and p7, involved in genomic RNA packaging.

The pol gene encodes the enzymatic complex: reverse transcriptase (p66/p51), integrase (p31–32), protease (p10), and RNase H (p15).

Why is PCR not used at the screening stage?

PCR is not used for primary diagnostics due to the high genetic variability of the virus. Mutations can alter target genomic regions, making the virus undetectable by standard test systems during the initial phase.

What are the criteria for a positive result in Western blotting?

A diagnosis is considered confirmed if the serum contains antibodies against at least two viral envelope glycoproteins (env group proteins). The presence of antibodies against core proteins (gag) and enzymes (pol) is not mandatory.

Which parameter indicates the development of immunosuppression?

The marker of immunosuppression during immunological monitoring is a decrease in the CD4+ T-cell count below 500 cells/µL.

What is PCR used for after diagnosis?

PCR is used to assess viral load (which determines disease severity and prognosis), identify the viral subtype, and determine pathogen drug resistance.

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