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Physiological Period in Microbiology

For medical students3 min readUpdated 2026-10-10

The physiological period in the development of microbiology began in the 19th century and continues to this day. During this era, the science made a qualitative leap: researchers shifted from simply noting the existence of microbes to deeply studying their physiology, biological properties, and role in disease pathogenesis.

ChronologyBegan in the 19th century and continues to the present day.
Focus shiftTransition from discovering microorganisms to studying their functions and role in pathology.
StereochemistryFounded by Pasteur after proving that molds metabolize only specific isomers.
Henle-Koch postulatesA set of criteria to establish a causal relationship between a microbe and a specific infectious disease.

Louis Pasteur's Contributions to Science

Louis Pasteur (1822–1895) was an outstanding French scientist with a primary background in chemistry. Thanks to his unique experimental talent, he became the founder of several scientific fields simultaneously: microbiology, biotechnology, disinfection science, and stereochemistry.

He began his scientific journey in chemistry. At the age of 26, Pasteur successfully defended his dissertation on arsenic compounds (potassium, sodium, and ammonium). While observing the growth of molds, the researcher made a key discovery: microorganisms are capable of metabolizing exclusively specific stereoisomers. This observation made him the father of a new science—stereochemistry.

Later, Pasteur turned to the study of fermentation processes, which at the time were entirely dominated by Justus von Liebig's chemical theory. Pasteur experimentally proved that alcoholic, lactic acid, and acetic acid fermentations are purely biological processes. They are initiated by microorganisms and specific enzymes secreted by them. This is how modern biotechnology was born.

His most resonant triumph was refuting the ancient dogma of spontaneous generation. For centuries, it was believed that living matter could arise from non-living matter (e.g., microbes from dirt or frogs from mud). Pasteur conducted an elegant experiment:

Pasteurization and Immunology

Studying the causes of putrefaction and so-called "wine diseases," Pasteur proved the key role of microbes in these processes. To save beverages, he developed an effective method of heating liquids to 50–60 °C. This temperature treatment resulted in the reliable destruction of vegetative forms of bacteria.

Subsequently, this method was named pasteurization. Pasteur's work in this direction formed the basis of modern fundamental principles of asepsis and disinfection. In the field of immunology, the researcher also made a breakthrough by developing the basic principle of vaccination and the first methods for producing vaccines.

Robert Koch's Methodology and Etiology

Robert Koch (1843–1910) was a prominent German bacteriologist who revolutionized laboratory practice and research methodology. He focused on improving techniques for working with microorganisms.

Koch made a colossal contribution to the development of microbiology by proposing new staining methods for bacterial cells. He was the first to introduce microphotography into everyday practice, which allowed for the documentation of observational results. Koch's most important achievement was the development of reliable algorithms for obtaining pure cultures of microorganisms.

Henle-Koch Postulates

The concept making it possible to prove that a specific microbe is the causative agent of a specific infectious disease was originally proposed by Jakob Henle. However, Robert Koch ultimately formulated and developed this principle.

The postulates include three mandatory conditions:

  1. The microorganism must be found in abundance in all organisms suffering from the disease, should not be found in healthy animals.
  2. The microorganism must be isolated from a diseased organism and grown in a pure culture.
  3. The cultured microorganism should cause disease when introduced into a healthy experimental animal.

Despite its historical fundamentality, in modern clinical medicine, the postulates have relative significance and are not always applicable. There are two main reasons for this:

Mnemonic

To remember the essence of the Henle-Koch postulates, use the "Find, Isolate, Replicate" algorithm: 1. Find in the sick (and not in the healthy) → 2. Isolate (obtain a pure culture) → 3. Replicate the disease (infect an animal).

Frequently asked questions

What vaccines were first developed by Louis Pasteur?

Louis Pasteur developed vaccines against fowl cholera, anthrax, and rabies. The rabies vaccine was the first live attenuated vaccine obtained from the brains of infected rabbits and dogs; its effectiveness was proven for prevention and treatment after a bite.

What theory of fermentation dominated science before Pasteur's discoveries?

Before Pasteur's work, Liebig's chemical theory dominated, which denied the biological nature of this process.

What was the purpose of the "swan-neck" flask experiment?

The spirally curved tube allowed air to pass through but trapped dust and microorganisms in the bends. This proved that microbes do not spontaneously generate in the broth, but enter it from the outside.

Why are the Henle-Koch postulates not a universal rule in modern medicine?

They do not account for the existence of healthy microbial carriers and the fact that many human-specific infections (e.g., HIV) cannot be reproduced in laboratory animals.

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