Sechenov School
Home › Microbiology › Physicochemical Diagnostic Methods in Microbiology

Physicochemical Diagnostic Methods

For medical students2 min readUpdated 2026-10-10

Physicochemical diagnostic methods comprise a group of instrumental investigations designed to detect microorganisms via their specific metabolites or unique physical properties. In clinical microbiology, gas-liquid chromatography and laser fluorescence hold the greatest practical importance.

ChromatographyIncludes high-performance liquid, gas-liquid, gas, and thin-layer chromatography
Anaerobic MarkersVolatile fatty acids detected using gas-liquid chromatography (GLC)
Laser PrincipleRegistration of intrinsic microbial autofluorescence
Major LimitationLow specificity of the laser-fluorescence method

Types of Chromatography in Diagnostics

Laboratory practice utilizes a spectrum of chromatographic approaches, including:

Each of these variants aims to separate complex mixtures of substances present in biological material; however, GLC has found particularly wide application in the routine rapid diagnosis of specific infections.

Gas-Liquid Chromatography (GLC)

This method has become the gold standard for the rapid diagnosis of anaerobic infections.

The operating principle is based on the chromatographic detection of specific bacterial metabolic products directly within the test sample. During their vital activity, microorganisms release specific substances that can be instrumentally captured.

The primary metabolic markers for the presence of anaerobes are volatile fatty acids. By detecting them in a sample using GLC, a microbiologist can confirm the presence of anaerobic flora with a high degree of confidence, without waiting for the results of time-consuming culture growth.

Laser-Fluorescence Rapid Method

An alternative physicochemical approach relies on the optical properties of biological objects. The operational principle involves three key steps:

  1. Irradiation of the clinical material with a directed laser beam.
  2. Registration of the intrinsic fluorescence (so-called autofluorescence) of the studied material.
  3. Analysis of the emission spectrum. This spectrum is considered unique for most known microbes, as well as for their metabolic products.

The method is actively used in purulent-inflammatory diseases and various dysbioses. It is of particular value in dental pathology, assisting in the diagnosis of dental caries and periodontitis. Additionally, fluorescence evaluation is used to predict the efficacy of prescribed treatment.

Despite its high-tech nature, the method has a significant drawback — low specificity. The device registers light emission but is not always able to precisely differentiate closely related microbial species (unlike methods aimed at strict pathogen identification, viral load determination, or classical antibiotic susceptibility testing).

Mnemonic

To remember GLC markers: "Anaerobes Fly with Fatty Acids" (referring to volatile fatty acids).

Frequently asked questions

What is gas-liquid chromatography primarily used for?

GLC is used for the rapid diagnosis of anaerobic infections by detecting volatile fatty acids in the specimen.

What is the principle of the laser-fluorescence method?

It is based on irradiating the material with a laser and subsequently recording the unique spectrum of the microbes' intrinsic autofluorescence.

What is the main drawback of laser fluorescence?

The method has low specificity, which limits its utility for the precise identification of a specific pathogen.

Go deeper

More topics in Microbiology

Pneumocystosis (Pneumocystis jirovecii)Immunological Period of MicrobiologyHuman Normal MicrofloraAntifungal ImmunitySystemic VasculitidesEcological and Epidemiological Classification of InfectionsPenicillium and Aspergillus Toxicosis: USMLE ReviewBacterial Cell WallDNA Replication in BacteriaUrine Microbiological CultureBacterial TransformationSynthetic Antimicrobial AgentsMicrobiology →